Seminars

	PyMood
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Sequence Data Analysis and Visualization - Seminar 1

• Overview of the PyMood 3D visualization and data retrieval capabilities.
• FASTA file format, downloading FASTA files from public resources and creation of new FASTA files.
• Running BLAST using PyMood BLAST Launcher / Parser.
• Interpretation of parsed BLAST output files.

Sequence Data Analysis and Visualization - Seminar 2

• Overview of the PyMood 3D visualization and data retrieval capabilities.
• Modification of FASTA files: splitting of files and sequences, combining multiple FASTA files, assigning new sequence IDs.
• Removing and masking undesired (low quality, vector, contaminant, specific motifs, etc) sequences from FASTA files.

Sequence and Expression Data Analysis and Visualization - Seminar 3

• Overview of the PyMood 3D and 2D visualization and data retrieval capabilities.
• Web publishing of expression data from microarrays and BLAST results: 2D pictorial outputs with image-map tags, linking to internal and external databases, and modification of auto-produced web-pages.
• Generation of HTML tables with automated gene annotation.