Search allometra.com
Google
Allometra
home contact press arabidopsis yersinia fowlpox  mpss cacao



Comparison of Yersinia pestis with Escherichia coli, Salmonella typhi, and Salmonella typhimurium

summary fasta files blastp outputs browsable images (1.7MB) gene lists



blastp outputs

Yersinia pestis vs. Escherichia coli

Yersinia_pestis_KIM_vs_Escherichia_coli_K12.blastp

Yersinia pestis vs. Salmonella typhi

Yersinia_pestis_KIM_vs_Salmonella_typhi.blastp

Yersinia pestis vs. Salmonella typhimurium

Yersinia_pestis_KIM_vs_Salmonella_typhimurium.blastp

(Sorry for the inconvenience, blastp files will be available for download soon.)

RGB Matrix File (all matrix files combined): Yersinia_pestis.rgb

.rgb file format
The .rgb file consists of seven columns:
A. unique identifier for query gene
B. normalized expectation value of the best hit from the red target database
C. normalized expectation value of the best hit from the green target database
D. normalized expectation value of the best hit from the blue target database
E. unique identifier of the best hit from the red target database
F. unique identifier of the best hit from the green target database
G. unique identifier of the best hit from the blue target database

* normalized expectation value reflects the absolute value of the exponent in the expectation value. If the expectation value is 2x10-15 (2e-15), the normalized expectation value is 15. For all expectation values better than 10-100 (1e-100), like 3x10-101 (3e-101), 7x10-156 (7e-156), etc., the normalized expectation value 100 is assigned.

The .rgb file can be visualized in PyMood.


The Yersinia project is in public domain. The rest © 2001-2010 Allometra, LLC